Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm19692-201ENSMUST00000203856 2084 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC11.56□□□□□ -0.56
Trim40Q3UWA4 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Gm28693-202ENSMUST00000190758 331 ntBASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Gm44855-201ENSMUST00000205725 362 ntBASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim40Q3UWA4 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm5859-201ENSMUST00000165401 2324 ntBASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim40Q3UWA4 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms