Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm11478-201ENSMUST00000117851 599 ntBASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm11637-201ENSMUST00000120601 592 ntBASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm22331-201ENSMUST00000158066 136 ntBASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm7561-201ENSMUST00000211203 886 ntBASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lima1Q9ERG0 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms