Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm11814-201ENSMUST00000119515 929 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm8810-201ENSMUST00000172895 754 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm42863-201ENSMUST00000197875 2958 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm17244-201ENSMUST00000192482 3416 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Ddx28Q9CWT6 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm12291-201ENSMUST00000121627 311 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm27839-201ENSMUST00000184242 106 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm27486-201ENSMUST00000184923 80 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm8131-201ENSMUST00000213783 1570 ntBASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Ddx28Q9CWT6 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms