Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Traf1P39428 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.33□□□□□ -0.12
Traf1P39428 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
Traf1P39428 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Traf1P39428 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Traf1P39428 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.32□□□□□ -0.12
Traf1P39428 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.32□□□□□ -0.12
Traf1P39428 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.32□□□□□ -0.12
Traf1P39428 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Traf1P39428 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Gm3052-202ENSMUST00000188254 2224 ntBASIC14.32□□□□□ -0.12
Traf1P39428 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Traf1P39428 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.32□□□□□ -0.12
Traf1P39428 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Traf1P39428 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC14.32□□□□□ -0.12
Traf1P39428 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Traf1P39428 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Mir7070-201ENSMUST00000183657 86 ntBASIC14.32□□□□□ -0.12
Traf1P39428 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.32□□□□□ -0.12
Traf1P39428 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Gm8385-201ENSMUST00000058999 643 ntBASIC14.32□□□□□ -0.12
Traf1P39428 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Traf1P39428 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC14.32□□□□□ -0.12
Traf1P39428 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Traf1P39428 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Traf1P39428 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC14.31□□□□□ -0.12
Traf1P39428 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC14.31□□□□□ -0.12
Traf1P39428 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC14.31□□□□□ -0.12
Traf1P39428 Gm27341-201ENSMUST00000183570 106 ntBASIC14.31□□□□□ -0.12
Traf1P39428 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC14.31□□□□□ -0.12
Traf1P39428 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC14.31□□□□□ -0.12
Traf1P39428 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.31□□□□□ -0.12
Traf1P39428 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.31□□□□□ -0.12
Traf1P39428 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC14.31□□□□□ -0.12
Traf1P39428 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Traf1P39428 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Gm45011-201ENSMUST00000207620 2297 ntBASIC14.3□□□□□ -0.12
Traf1P39428 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Traf1P39428 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Traf1P39428 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.3□□□□□ -0.12
Traf1P39428 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Traf1P39428 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC14.3□□□□□ -0.12
Traf1P39428 Gm44262-201ENSMUST00000204969 372 ntBASIC14.3□□□□□ -0.12
Traf1P39428 Gm45433-201ENSMUST00000209386 247 ntBASIC14.3□□□□□ -0.12
Traf1P39428 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms