Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm5597-201ENSMUST00000182353 1193 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm37845-201ENSMUST00000194977 355 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm42696-201ENSMUST00000199859 1142 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 9530003J23Rik-201ENSMUST00000020392 1233 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 4930595O18Rik-201ENSMUST00000205099 607 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Olfr163-ps1-201ENSMUST00000205891 940 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm30285-201ENSMUST00000214614 422 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm5178-201ENSMUST00000219380 898 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC9.8□□□□□ -0.84
Hoxd3P09027 AC154683.1-201ENSMUST00000228409 1284 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC9.8□□□□□ -0.84
Hoxd3P09027 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Olfr570-202ENSMUST00000209778 1423 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Gm7002-201ENSMUST00000221386 2165 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 AC164107.1-201ENSMUST00000227730 2161 ntBASIC9.8□□□□□ -0.84
Hoxd3P09027 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Hoxd3P09027 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hoxd3P09027 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
Hoxd3P09027 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm10999-201ENSMUST00000108743 207 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm11980-201ENSMUST00000121445 986 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm13487-201ENSMUST00000122240 864 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm37259-201ENSMUST00000193903 849 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm43400-201ENSMUST00000197294 1254 ntTSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 5430434I15Rik-201ENSMUST00000197658 1257 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm44405-201ENSMUST00000198952 126 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm19590-201ENSMUST00000201551 1195 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC9.79□□□□□ -0.84
Hoxd3P09027 9430031K09Rik-201ENSMUST00000222913 925 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 AC108416.1-202ENSMUST00000228927 1201 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Olfr1242-201ENSMUST00000099777 1053 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
Hoxd3P09027 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm44891-201ENSMUST00000208817 2223 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Gm4366-201ENSMUST00000201488 1342 ntBASIC9.79□□□□□ -0.84
Hoxd3P09027 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Hoxd3P09027 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Hoxd3P09027 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Hoxd3P09027 Gm45638-201ENSMUST00000211507 2878 ntBASIC9.78□□□□□ -0.84
Hoxd3P09027 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms