Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Cog3-203ENSMUST00000227473 4197 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm12203-201ENSMUST00000118235 598 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm12209-201ENSMUST00000120089 596 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm27486-201ENSMUST00000184923 80 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 AC166051.1-201ENSMUST00000214313 210 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 AC132317.1-201ENSMUST00000227227 962 ntBASIC12.21□□□□□ -0.45
Lima1Q9ERG0 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lima1Q9ERG0 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lima1Q9ERG0 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lima1Q9ERG0 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.19□□□□□ -0.46
Lima1Q9ERG0 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lima1Q9ERG0 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms