Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 AC126262.1-201ENSMUST00000221802 1904 ntBASIC11.81□□□□□ -0.52
Nr1h4Q60641 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nr1h4Q60641 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.8□□□□□ -0.52
Nr1h4Q60641 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.8□□□□□ -0.52
Nr1h4Q60641 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Nr1h4Q60641 AC122860.2-201ENSMUST00000217967 2671 ntBASIC11.8□□□□□ -0.52
Nr1h4Q60641 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nr1h4Q60641 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.79□□□□□ -0.52
Nr1h4Q60641 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.79□□□□□ -0.52
Nr1h4Q60641 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gm28911-201ENSMUST00000188837 117 ntBASIC11.79□□□□□ -0.52
Nr1h4Q60641 Gm37497-201ENSMUST00000195830 798 ntBASIC11.79□□□□□ -0.52
Nr1h4Q60641 AL593843.1-201ENSMUST00000195891 145 ntBASIC11.79□□□□□ -0.52
Nr1h4Q60641 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms