Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm14921-201ENSMUST00000118643 908 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm6983-201ENSMUST00000214912 628 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 AC124732.1-201ENSMUST00000221551 910 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Wdyhv1-203ENSMUST00000226889 394 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Itm2b-204ENSMUST00000228637 783 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm44397-201ENSMUST00000195950 113 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm20949-201ENSMUST00000206478 952 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 AC154687.2-201ENSMUST00000223853 640 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm16372-201ENSMUST00000073088 450 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms