Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cd40lgP27548 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cd40lgP27548 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Cd40lgP27548 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.48□□□□□ -0.57
Cd40lgP27548 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cd40lgP27548 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cd40lgP27548 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.48□□□□□ -0.57
Cd40lgP27548 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.48□□□□□ -0.57
Cd40lgP27548 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm23931-201ENSMUST00000103842 109 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm12241-201ENSMUST00000118330 726 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.57
Cd40lgP27548 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Mospd4-201ENSMUST00000180618 576 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm6222-202ENSMUST00000182143 629 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm3890-201ENSMUST00000182416 207 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm44364-201ENSMUST00000198368 141 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm18054-201ENSMUST00000207539 555 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Map1b-203ENSMUST00000223725 2669 ntBASIC11.47□□□□□ -0.57
Cd40lgP27548 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cd40lgP27548 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Cd40lgP27548 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm22018-201ENSMUST00000104357 131 ntBASIC11.46□□□□□ -0.57
Cd40lgP27548 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm29396-201ENSMUST00000185659 716 ntBASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm6007-201ENSMUST00000208170 823 ntBASIC11.46□□□□□ -0.57
Cd40lgP27548 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Gm9823-201ENSMUST00000051212 327 ntBASIC11.46□□□□□ -0.57
Cd40lgP27548 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cd40lgP27548 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms