Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm17208-201ENSMUST00000168388 535 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm22121-201ENSMUST00000175148 54 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm20949-201ENSMUST00000206478 952 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Cdk7-205ENSMUST00000225990 1159 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Wdyhv1-203ENSMUST00000226889 394 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shisa8J3QNX5 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Snord83b-201ENSMUST00000104546 94 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm12928-201ENSMUST00000117115 573 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm15703-201ENSMUST00000120250 880 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Mir6392-201ENSMUST00000184924 108 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm35960-201ENSMUST00000202712 767 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm18624-201ENSMUST00000220966 658 ntBASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shisa8J3QNX5 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Shisa8J3QNX5 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms