Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 AC153954.1-201ENSMUST00000216959 255 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm26448-201ENSMUST00000082446 203 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm3332-201ENSMUST00000189337 928 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm43184-201ENSMUST00000197247 542 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm44545-201ENSMUST00000208262 746 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm8285-201ENSMUST00000208293 759 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm807-202ENSMUST00000224929 408 ntBASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Upf3aQ3ULJ3 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Upf3aQ3ULJ3 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Upf3aQ3ULJ3 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms