Protein–RNA interactions for Protein: Q07643

Col9a2, Collagen alpha-2(IX) chain, mousemouse

Predictions only

Length 688 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a2Q07643 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col9a2Q07643 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col9a2Q07643 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Col9a2Q07643 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col9a2Q07643 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.41□□□□□ -0.26
Col9a2Q07643 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
Col9a2Q07643 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col9a2Q07643 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col9a2Q07643 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Selenot-ps-201ENSMUST00000119098 593 ntBASIC13.4□□□□□ -0.26
Col9a2Q07643 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Gm5523-201ENSMUST00000180415 997 ntBASIC13.4□□□□□ -0.26
Col9a2Q07643 AY036118-201ENSMUST00000200021 923 ntBASIC13.4□□□□□ -0.26
Col9a2Q07643 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.4□□□□□ -0.26
Col9a2Q07643 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.4□□□□□ -0.26
Col9a2Q07643 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col9a2Q07643 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col9a2Q07643 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Col9a2Q07643 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Col9a2Q07643 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm17040-202ENSMUST00000170597 889 ntBASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm43962-201ENSMUST00000203898 190 ntBASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.39□□□□□ -0.27
Col9a2Q07643 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col9a2Q07643 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.39□□□□□ -0.27
Col9a2Q07643 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.39□□□□□ -0.27
Col9a2Q07643 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm11509-201ENSMUST00000117358 325 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.38□□□□□ -0.27
Col9a2Q07643 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.38□□□□□ -0.27
Col9a2Q07643 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm27627-201ENSMUST00000183644 150 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm4607-201ENSMUST00000206649 577 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Gm7848-201ENSMUST00000210739 718 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 CT009718.3-201ENSMUST00000221116 367 ntBASIC13.38□□□□□ -0.27
Col9a2Q07643 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col9a2Q07643 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms