Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Vps28Q9D1C8 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.74□□□□□ -0.37
Vps28Q9D1C8 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.74□□□□□ -0.37
Vps28Q9D1C8 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Vps28Q9D1C8 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm23270-201ENSMUST00000104055 131 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm26083-201ENSMUST00000157904 193 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 AC125209.1-201ENSMUST00000225812 766 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm10076-201ENSMUST00000073238 384 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms