Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Traf1P39428 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC14.4□□□□□ -0.1
Traf1P39428 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Gm13296-201ENSMUST00000117854 997 ntBASIC14.4□□□□□ -0.1
Traf1P39428 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Gm2260-201ENSMUST00000184965 657 ntBASIC14.4□□□□□ -0.1
Traf1P39428 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Traf1P39428 Aprt-ps-201ENSMUST00000212311 505 ntBASIC14.4□□□□□ -0.1
Traf1P39428 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.4□□□□□ -0.1
Traf1P39428 Gm39404-201ENSMUST00000216350 313 ntBASIC14.4□□□□□ -0.1
Traf1P39428 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Traf1P39428 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
Traf1P39428 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Traf1P39428 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.4□□□□□ -0.1
Traf1P39428 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Traf1P39428 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Traf1P39428 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.39□□□□□ -0.11
Traf1P39428 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.39□□□□□ -0.11
Traf1P39428 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Traf1P39428 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC14.39□□□□□ -0.11
Traf1P39428 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm8494-201ENSMUST00000178171 1233 ntBASIC14.39□□□□□ -0.11
Traf1P39428 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.39□□□□□ -0.11
Traf1P39428 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.39□□□□□ -0.11
Traf1P39428 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.39□□□□□ -0.11
Traf1P39428 Gm45691-201ENSMUST00000206905 1120 ntBASIC14.39□□□□□ -0.11
Traf1P39428 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.39□□□□□ -0.11
Traf1P39428 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Traf1P39428 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Traf1P39428 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 AC122197.2-201ENSMUST00000219196 1635 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.38□□□□□ -0.11
Traf1P39428 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Gm24990-201ENSMUST00000157406 323 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Gm24845-201ENSMUST00000158034 109 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Gm32999-201ENSMUST00000192693 562 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Gm19208-201ENSMUST00000213861 912 ntBASIC14.38□□□□□ -0.11
Traf1P39428 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.38□□□□□ -0.11
Traf1P39428 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms