Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Lire1P11260 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Gm45132-201ENSMUST00000207234 2542 ntBASIC11.88□□□□□ -0.51
Lire1P11260 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Lire1P11260 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Lire1P11260 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lire1P11260 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Olfr1415-202ENSMUST00000204009 2815 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
Lire1P11260 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC11.87□□□□□ -0.51
Lire1P11260 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 CT010480.4-201ENSMUST00000224654 2283 ntBASIC11.87□□□□□ -0.51
Lire1P11260 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Gm11803-201ENSMUST00000119966 444 ntBASIC11.87□□□□□ -0.51
Lire1P11260 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC11.87□□□□□ -0.51
Lire1P11260 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Lire1P11260 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
Lire1P11260 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.87□□□□□ -0.51
Lire1P11260 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 Gm19309-201ENSMUST00000218295 205 ntBASIC11.87□□□□□ -0.51
Lire1P11260 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Lire1P11260 Tmem130-201ENSMUST00000061446 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.87□□□□□ -0.51
Lire1P11260 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.87□□□□□ -0.51
Lire1P11260 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Lire1P11260 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lire1P11260 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Gm1995-201ENSMUST00000220838 2602 ntBASIC11.86□□□□□ -0.51
Lire1P11260 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.86□□□□□ -0.51
Lire1P11260 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.86□□□□□ -0.51
Lire1P11260 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Gm27331-201ENSMUST00000183705 60 ntBASIC11.86□□□□□ -0.51
Lire1P11260 Gm38144-201ENSMUST00000192790 465 ntBASIC11.86□□□□□ -0.51
Lire1P11260 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Gm29705-201ENSMUST00000212598 474 ntBASIC11.86□□□□□ -0.51
Lire1P11260 Itm2b-204ENSMUST00000228637 783 ntBASIC11.86□□□□□ -0.51
Lire1P11260 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Lire1P11260 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Lire1P11260 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lire1P11260 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms