Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chmp6P0C0A3 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm27516-201ENSMUST00000184237 98 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm43118-201ENSMUST00000199149 775 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm18935-201ENSMUST00000212692 664 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Olfr582-201ENSMUST00000098212 960 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.54□□□□□ -0.24
Chmp6P0C0A3 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm8801-201ENSMUST00000173255 1064 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm27501-201ENSMUST00000183599 107 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm29396-201ENSMUST00000185659 716 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm37489-201ENSMUST00000191883 159 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chmp6P0C0A3 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms