Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm27741-201ENSMUST00000185060 237 ntBASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm5312-201ENSMUST00000203728 547 ntBASIC10.27□□□□□ -0.77
Hmgb3O54879 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Zfp275-201ENSMUST00000033731 6376 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Nol8-209ENSMUST00000223467 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Hmgb3O54879 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Hmgb3O54879 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Gm43727-201ENSMUST00000198021 2647 ntBASIC10.26□□□□□ -0.77
Hmgb3O54879 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Mcc-201ENSMUST00000089874 7858 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Gm27321-201ENSMUST00000185021 205 ntBASIC10.26□□□□□ -0.77
Hmgb3O54879 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC10.26□□□□□ -0.77
Hmgb3O54879 AW822252-206ENSMUST00000208904 237 ntBASIC10.26□□□□□ -0.77
Hmgb3O54879 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 L1cam-203ENSMUST00000114430 5126 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC10.26□□□□□ -0.77
Hmgb3O54879 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Arhgef3-204ENSMUST00000225949 3198 ntBASIC10.26□□□□□ -0.77
Hmgb3O54879 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Hmgb3O54879 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm5303-201ENSMUST00000117943 1252 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm11594-201ENSMUST00000122313 162 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Gm42550-201ENSMUST00000201553 960 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC10.25□□□□□ -0.77
Hmgb3O54879 AC165157.4-201ENSMUST00000220587 139 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 AC169036.1-201ENSMUST00000227994 296 ntBASIC10.25□□□□□ -0.77
Hmgb3O54879 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Hmgb3O54879 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hmgb3O54879 Rn7sk-201ENSMUST00000083103 331 ntBASIC10.25□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 237.4 ms