Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm11591-201ENSMUST00000120063 702 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm14704-201ENSMUST00000120300 874 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm6222-202ENSMUST00000182143 629 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm45880-201ENSMUST00000213041 853 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm8399-201ENSMUST00000082300 1117 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Gm6210-201ENSMUST00000204734 1942 ntBASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trim3Q9R1R2 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.73□□□□□ -0.53
Trim3Q9R1R2 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.73□□□□□ -0.53
Trim3Q9R1R2 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Trim3Q9R1R2 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms