Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lima1Q9ERG0 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Gm11618-201ENSMUST00000117946 267 ntBASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lima1Q9ERG0 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Lima1Q9ERG0 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm11803-201ENSMUST00000119966 444 ntBASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm28693-202ENSMUST00000190758 331 ntBASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm35960-201ENSMUST00000202712 767 ntBASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Arhgef33-209ENSMUST00000225223 714 ntBASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 102.8 ms