Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Gm14193-201ENSMUST00000105067 153 ntBASIC18.82■□□□□ 0.6
Cux1P53564 Gm4993-201ENSMUST00000118719 1174 ntBASIC18.82■□□□□ 0.6
Cux1P53564 Gm25072-201ENSMUST00000175233 235 ntBASIC18.82■□□□□ 0.6
Cux1P53564 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 AC129931.1-201ENSMUST00000228865 1861 ntBASIC18.82■□□□□ 0.6
Cux1P53564 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC18.82■□□□□ 0.6
Cux1P53564 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Cux1P53564 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC18.81■□□□□ 0.6
Cux1P53564 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
Cux1P53564 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC18.81■□□□□ 0.6
Cux1P53564 Gm1848-201ENSMUST00000120711 789 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Gm11660-201ENSMUST00000120955 412 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC18.81■□□□□ 0.6
Cux1P53564 Gm3671-201ENSMUST00000182463 1007 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC18.81■□□□□ 0.6
Cux1P53564 CT485606.1-201ENSMUST00000213187 878 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Gm6430-201ENSMUST00000054664 1248 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Mirlet7i-201ENSMUST00000083472 85 ntBASIC18.81■□□□□ 0.6
Cux1P53564 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Cux1P53564 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cux1P53564 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 AC123834.1-201ENSMUST00000225346 2043 ntBASIC18.8■□□□□ 0.6
Cux1P53564 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Cux1P53564 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Gm8737-201ENSMUST00000122208 642 ntBASIC18.8■□□□□ 0.6
Cux1P53564 n-R5s84-201ENSMUST00000122591 109 ntBASIC18.8■□□□□ 0.6
Cux1P53564 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Cux1P53564 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
Cux1P53564 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Gm3551-201ENSMUST00000190750 664 ntBASIC18.8■□□□□ 0.6
Cux1P53564 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Cux1P53564 AC165260.2-203ENSMUST00000224237 336 ntBASIC18.8■□□□□ 0.6
Cux1P53564 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cux1P53564 Gm5380-201ENSMUST00000119296 2136 ntBASIC18.8■□□□□ 0.6
Cux1P53564 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Cux1P53564 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Gm9034-201ENSMUST00000182071 1005 ntBASIC18.79■□□□□ 0.6
Cux1P53564 AC174797.2-202ENSMUST00000225729 568 ntBASIC18.79■□□□□ 0.6
Cux1P53564 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cux1P53564 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Gm13384-201ENSMUST00000117166 1344 ntBASIC18.79■□□□□ 0.6
Cux1P53564 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC18.79■□□□□ 0.6
Cux1P53564 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms