Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Ercc3P49135 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Ercc3P49135 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Ercc3P49135 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ercc3P49135 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
Ercc3P49135 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.78□□□□□ -0.04
Ercc3P49135 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ercc3P49135 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Ercc3P49135 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.78□□□□□ -0.04
Ercc3P49135 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.78□□□□□ -0.04
Ercc3P49135 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.78□□□□□ -0.04
Ercc3P49135 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ercc3P49135 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ercc3P49135 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ercc3P49135 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Ercc3P49135 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ercc3P49135 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ercc3P49135 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.77□□□□□ -0.04
Ercc3P49135 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
Ercc3P49135 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Ercc3P49135 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC14.77□□□□□ -0.04
Ercc3P49135 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ercc3P49135 Gm24231-201ENSMUST00000104315 133 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Gm14999-201ENSMUST00000121039 624 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ercc3P49135 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Gm7783-201ENSMUST00000204795 781 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 CT025533.2-201ENSMUST00000228715 1248 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Gm26035-201ENSMUST00000083065 308 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ercc3P49135 Pck2-205ENSMUST00000226352 2784 ntBASIC14.77□□□□□ -0.05
Ercc3P49135 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ercc3P49135 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ercc3P49135 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Ercc3P49135 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms