Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Msx1P13297 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Pbld1-201ENSMUST00000020266 2407 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Msx1P13297 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
Msx1P13297 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Msx1P13297 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx1P13297 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Msx1P13297 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Rubie-203ENSMUST00000227803 2430 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 AC158355.1-201ENSMUST00000215895 1705 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Msx1P13297 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm4909-201ENSMUST00000118749 794 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC11.98□□□□□ -0.49
Msx1P13297 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm37215-201ENSMUST00000194927 1259 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm30285-201ENSMUST00000214614 422 ntBASIC11.98□□□□□ -0.49
Msx1P13297 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 AC165260.4-201ENSMUST00000225924 724 ntBASIC11.98□□□□□ -0.49
Msx1P13297 CT025538.2-201ENSMUST00000226083 772 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Msx1P13297 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm25131-201ENSMUST00000082653 151 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Msx1P13297 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.98□□□□□ -0.49
Msx1P13297 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Msx1P13297 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx1P13297 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Msx1P13297 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Msx1P13297 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Gm43052-201ENSMUST00000201451 1628 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
Msx1P13297 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.97□□□□□ -0.49
Msx1P13297 Gm11652-201ENSMUST00000117842 1267 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Gm11439-201ENSMUST00000118598 409 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Msx1P13297 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Gm14277-201ENSMUST00000121195 360 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC11.97□□□□□ -0.49
Msx1P13297 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.97□□□□□ -0.49
Msx1P13297 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 Mir5120-201ENSMUST00000175020 78 ntBASIC11.97□□□□□ -0.49
Msx1P13297 Esp18-201ENSMUST00000179848 1257 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Msx1P13297 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx1P13297 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms