Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hoxd3P09027 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC9.87□□□□□ -0.83
Hoxd3P09027 Gm8798-201ENSMUST00000211877 1661 ntBASIC9.87□□□□□ -0.83
Hoxd3P09027 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm42478-201ENSMUST00000199252 1467 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm14040-201ENSMUST00000139058 697 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm13316-201ENSMUST00000140537 691 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm6652-201ENSMUST00000186414 1070 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm42565-201ENSMUST00000197839 572 ntTSL 5 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Vmn1r35-201ENSMUST00000071414 891 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Nme5-201ENSMUST00000079287 843 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Mir339-201ENSMUST00000083659 96 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC9.86□□□□□ -0.83
Hoxd3P09027 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Skint10-201ENSMUST00000060327 1376 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hoxd3P09027 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC9.86□□□□□ -0.83
Hoxd3P09027 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm13740-201ENSMUST00000120590 310 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm14381-201ENSMUST00000122105 414 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm15200-201ENSMUST00000149950 410 ntTSL 2 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm7895-201ENSMUST00000187459 1173 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm36966-201ENSMUST00000192217 413 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm18916-201ENSMUST00000198264 1246 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Olfr1473-ps1-201ENSMUST00000207135 958 ntBASIC9.85□□□□□ -0.83
Hoxd3P09027 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Vmn1r85-201ENSMUST00000094829 927 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC9.85□□□□□ -0.83
Hoxd3P09027 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hoxd3P09027 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms