Protein–RNA interactions for Protein: Q9QZM3

Clcf1, Cardiotrophin-like cytokine factor 1, mousemouse

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcf1Q9QZM3 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Clcf1Q9QZM3 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Clcf1Q9QZM3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clcf1Q9QZM3 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clcf1Q9QZM3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clcf1Q9QZM3 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Clcf1Q9QZM3 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clcf1Q9QZM3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clcf1Q9QZM3 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clcf1Q9QZM3 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.86■□□□□ 0.61
Clcf1Q9QZM3 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clcf1Q9QZM3 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Gm40881-201ENSMUST00000223397 166 ntBASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clcf1Q9QZM3 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Clcf1Q9QZM3 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clcf1Q9QZM3 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Clcf1Q9QZM3 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clcf1Q9QZM3 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clcf1Q9QZM3 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Gm7417-201ENSMUST00000192950 473 ntBASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Clcf1Q9QZM3 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Gm10399-202ENSMUST00000202768 748 ntBASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clcf1Q9QZM3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clcf1Q9QZM3 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.81■□□□□ 0.6
Clcf1Q9QZM3 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Clcf1Q9QZM3 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clcf1Q9QZM3 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clcf1Q9QZM3 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clcf1Q9QZM3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Clcf1Q9QZM3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Clcf1Q9QZM3 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms