Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC17.3■□□□□ 0.36
Hmgb3O54879 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC17.3■□□□□ 0.36
Hmgb3O54879 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC17.3■□□□□ 0.36
Hmgb3O54879 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Hmgb3O54879 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Hmgb3O54879 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC17.29■□□□□ 0.36
Hmgb3O54879 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb3O54879 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb3O54879 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb3O54879 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb3O54879 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb3O54879 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC17.28■□□□□ 0.36
Hmgb3O54879 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb3O54879 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb3O54879 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb3O54879 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC17.27■□□□□ 0.36
Hmgb3O54879 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb3O54879 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb3O54879 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb3O54879 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb3O54879 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb3O54879 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb3O54879 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Gm4799-201ENSMUST00000095396 657 ntBASIC17.26■□□□□ 0.35
Hmgb3O54879 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb3O54879 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC17.26■□□□□ 0.35
Hmgb3O54879 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb3O54879 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb3O54879 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
Hmgb3O54879 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb3O54879 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Hmgb3O54879 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb3O54879 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb3O54879 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb3O54879 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb3O54879 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb3O54879 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb3O54879 Gm7199-201ENSMUST00000118327 1485 ntBASIC17.24■□□□□ 0.35
Hmgb3O54879 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb3O54879 Gm13889-201ENSMUST00000099689 1386 ntBASIC17.24■□□□□ 0.35
Hmgb3O54879 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb3O54879 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb3O54879 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC17.23■□□□□ 0.35
Hmgb3O54879 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Hmgb3O54879 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Gm42418-201ENSMUST00000182010 1831 ntBASIC17.22■□□□□ 0.35
Hmgb3O54879 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Hmgb3O54879 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hmgb3O54879 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms