Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm27572-201ENSMUST00000183702 255 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gm18054-201ENSMUST00000207539 555 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim3Q9R1R2 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 CT009757.3-201ENSMUST00000223367 2320 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gm16379-201ENSMUST00000161469 348 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gm17208-201ENSMUST00000168388 535 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gm38002-201ENSMUST00000193255 180 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gm8762-201ENSMUST00000193486 339 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.75□□□□□ -0.53
Trim3Q9R1R2 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 476.6 ms