Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Gm13600-201ENSMUST00000117949 744 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Gm23153-201ENSMUST00000175323 313 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 CT030637.1-201ENSMUST00000228016 669 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.54□□□□□ -0.08
Scn11aQ9R053 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Map1b-203ENSMUST00000223725 2669 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm22711-201ENSMUST00000116890 133 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm12628-201ENSMUST00000122193 382 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm5733-201ENSMUST00000190232 939 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm5714-201ENSMUST00000197343 566 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm42779-201ENSMUST00000198807 406 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 AC130671.2-201ENSMUST00000227224 1621 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 AC129931.1-201ENSMUST00000228865 1861 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.53□□□□□ -0.08
Scn11aQ9R053 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Scn11aQ9R053 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Gm45120-201ENSMUST00000208880 408 ntBASIC14.52□□□□□ -0.08
Scn11aQ9R053 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Gm5537-201ENSMUST00000091117 1252 ntBASIC14.52□□□□□ -0.08
Scn11aQ9R053 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.52□□□□□ -0.08
Scn11aQ9R053 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.52□□□□□ -0.08
Scn11aQ9R053 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Scn11aQ9R053 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC14.52□□□□□ -0.09
Scn11aQ9R053 Gm6905-201ENSMUST00000205729 511 ntBASIC14.52□□□□□ -0.09
Scn11aQ9R053 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Gm9139-201ENSMUST00000218817 700 ntBASIC14.52□□□□□ -0.09
Scn11aQ9R053 Gm6867-201ENSMUST00000219165 425 ntBASIC14.52□□□□□ -0.09
Scn11aQ9R053 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Scn11aQ9R053 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms