Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Stxbp4-203ENSMUST00000107875 1660 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm8152-201ENSMUST00000120842 637 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm11736-201ENSMUST00000121468 505 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm6612-201ENSMUST00000170777 395 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm6518-201ENSMUST00000208450 342 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 AC134248.1-201ENSMUST00000216113 1176 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 AC154213.1-201ENSMUST00000228234 583 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm4978-201ENSMUST00000071565 801 ntBASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn4aQ9ER60 Gm9415-201ENSMUST00000200462 1321 ntBASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Gm23745-201ENSMUST00000104230 125 ntBASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Gm23132-201ENSMUST00000104254 132 ntBASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Gm12345-201ENSMUST00000119288 898 ntBASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Rptoros-201ENSMUST00000127450 1174 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Gm43811-201ENSMUST00000202862 695 ntBASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Prss1-201ENSMUST00000031910 805 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.52■□□□□ 0.23
Scn4aQ9ER60 Eif2c5-201ENSMUST00000125609 1416 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Gm15197-201ENSMUST00000120526 478 ntBASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 AC022682.1-201ENSMUST00000224624 2023 ntBASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn4aQ9ER60 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm6755-201ENSMUST00000100598 864 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm6740-201ENSMUST00000100617 864 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm23912-201ENSMUST00000104687 87 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm11540-201ENSMUST00000117457 780 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm22344-201ENSMUST00000122642 278 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm27675-201ENSMUST00000184527 94 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 1700009J07Rik-202ENSMUST00000185309 920 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Eloc-208ENSMUST00000188641 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm8968-201ENSMUST00000199133 1303 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Gm45199-201ENSMUST00000207640 1507 ntBASIC16.5■□□□□ 0.23
Scn4aQ9ER60 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn4aQ9ER60 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC16.49■□□□□ 0.23
Scn4aQ9ER60 Gm8226-201ENSMUST00000190511 798 ntBASIC16.49■□□□□ 0.23
Scn4aQ9ER60 AC164556.1-201ENSMUST00000221318 751 ntBASIC16.49■□□□□ 0.23
Scn4aQ9ER60 AC117769.1-201ENSMUST00000224716 1120 ntBASIC16.49■□□□□ 0.23
Scn4aQ9ER60 CT010480.2-201ENSMUST00000225424 737 ntBASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms