Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.68□□□□□ -0.22
Lig3P97386 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lig3P97386 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.67□□□□□ -0.22
Lig3P97386 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gm7857-201ENSMUST00000117957 358 ntBASIC13.67□□□□□ -0.22
Lig3P97386 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.67□□□□□ -0.22
Lig3P97386 Gm8099-201ENSMUST00000200510 742 ntBASIC13.67□□□□□ -0.22
Lig3P97386 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Lig3P97386 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Lig3P97386 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Abhd6-203ENSMUST00000225234 1958 ntBASIC13.67□□□□□ -0.22
Lig3P97386 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Lig3P97386 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lig3P97386 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Lig3P97386 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lig3P97386 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lig3P97386 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lig3P97386 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Gm12217-201ENSMUST00000118858 696 ntBASIC13.66□□□□□ -0.22
Lig3P97386 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.66□□□□□ -0.22
Lig3P97386 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.66□□□□□ -0.22
Lig3P97386 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.66□□□□□ -0.22
Lig3P97386 Gm30285-201ENSMUST00000214614 422 ntBASIC13.66□□□□□ -0.22
Lig3P97386 CT009718.3-201ENSMUST00000221116 367 ntBASIC13.66□□□□□ -0.22
Lig3P97386 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
Lig3P97386 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lig3P97386 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lig3P97386 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lig3P97386 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
Lig3P97386 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lig3P97386 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Gm10434-201ENSMUST00000101158 471 ntBASIC13.65□□□□□ -0.22
Lig3P97386 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lig3P97386 Gm8805-201ENSMUST00000117848 313 ntBASIC13.65□□□□□ -0.22
Lig3P97386 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.65□□□□□ -0.22
Lig3P97386 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.65□□□□□ -0.22
Lig3P97386 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms