Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.47□□□□□ -0.25
RaraP11416 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RaraP11416 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RaraP11416 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13.47□□□□□ -0.25
RaraP11416 Gm6754-201ENSMUST00000117124 913 ntBASIC13.47□□□□□ -0.25
RaraP11416 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.47□□□□□ -0.25
RaraP11416 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Gm27682-201ENSMUST00000183930 110 ntBASIC13.47□□□□□ -0.25
RaraP11416 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.47□□□□□ -0.25
RaraP11416 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
RaraP11416 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Gm10268-201ENSMUST00000085340 555 ntBASIC13.47□□□□□ -0.25
RaraP11416 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC13.47□□□□□ -0.25
RaraP11416 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RaraP11416 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC13.46□□□□□ -0.25
RaraP11416 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.46□□□□□ -0.25
RaraP11416 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.46□□□□□ -0.25
RaraP11416 Gm27243-201ENSMUST00000183964 521 ntBASIC13.46□□□□□ -0.25
RaraP11416 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Gm24136-201ENSMUST00000083374 165 ntBASIC13.46□□□□□ -0.25
RaraP11416 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RaraP11416 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC13.46□□□□□ -0.25
RaraP11416 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.46□□□□□ -0.25
RaraP11416 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.46□□□□□ -0.25
RaraP11416 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.46□□□□□ -0.25
RaraP11416 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RaraP11416 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RaraP11416 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RaraP11416 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
RaraP11416 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
RaraP11416 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RaraP11416 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
RaraP11416 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC13.46□□□□□ -0.26
RaraP11416 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RaraP11416 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RaraP11416 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.45□□□□□ -0.26
RaraP11416 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RaraP11416 Gm15163-201ENSMUST00000120749 1302 ntBASIC13.45□□□□□ -0.26
RaraP11416 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.45□□□□□ -0.26
RaraP11416 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RaraP11416 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
RaraP11416 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RaraP11416 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RaraP11416 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
RaraP11416 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.45□□□□□ -0.26
RaraP11416 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
RaraP11416 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RaraP11416 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms