Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm13035-201ENSMUST00000117496 342 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Mir7032-201ENSMUST00000185154 79 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm17827-201ENSMUST00000211825 742 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3aQ3ULJ3 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm14058-201ENSMUST00000116082 735 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm11941-201ENSMUST00000119904 610 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Gm5051-201ENSMUST00000204085 485 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upf3aQ3ULJ3 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm12165-201ENSMUST00000117047 342 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms