Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.9□□□□□ -0.02
Rfx1P48377 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.9□□□□□ -0.02
Rfx1P48377 AC132317.1-201ENSMUST00000227227 962 ntBASIC14.9□□□□□ -0.02
Rfx1P48377 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Rfx1P48377 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Rfx1P48377 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Rfx1P48377 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx1P48377 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Rfx1P48377 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Rfx1P48377 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Rfx1P48377 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC14.89□□□□□ -0.03
Rfx1P48377 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 AC154639.1-201ENSMUST00000224393 2849 ntBASIC14.89□□□□□ -0.03
Rfx1P48377 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Rfx1P48377 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Rfx1P48377 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx1P48377 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Rfx1P48377 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx1P48377 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Gm43984-201ENSMUST00000204572 2864 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Rfx1P48377 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Rfx1P48377 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.88□□□□□ -0.03
Rfx1P48377 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.88□□□□□ -0.03
Rfx1P48377 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC14.88□□□□□ -0.03
Rfx1P48377 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.88□□□□□ -0.03
Rfx1P48377 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Rfx1P48377 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.88□□□□□ -0.03
Rfx1P48377 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx1P48377 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Rfx1P48377 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Rfx1P48377 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Rfx1P48377 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Rfx1P48377 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Rfx1P48377 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Rfx1P48377 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.87□□□□□ -0.03
Rfx1P48377 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 Gm14921-201ENSMUST00000118643 908 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.87□□□□□ -0.03
Rfx1P48377 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.87□□□□□ -0.03
Rfx1P48377 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Rfx1P48377 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC14.87□□□□□ -0.03
Rfx1P48377 Gm8598-201ENSMUST00000221184 836 ntBASIC14.87□□□□□ -0.03
Rfx1P48377 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms