Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Msx1P13297 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.03□□□□□ -0.48
Msx1P13297 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Msx1P13297 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Msx1P13297 AC153962.3-202ENSMUST00000217778 1412 ntTSL 5 BASIC12.03□□□□□ -0.48
Msx1P13297 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Msx1P13297 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Msx1P13297 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Gm10434-201ENSMUST00000101158 471 ntBASIC12.02□□□□□ -0.49
Msx1P13297 Gm13658-201ENSMUST00000135329 929 ntTSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC12.02□□□□□ -0.49
Msx1P13297 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Gm26185-201ENSMUST00000157692 266 ntBASIC12.02□□□□□ -0.49
Msx1P13297 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC12.02□□□□□ -0.49
Msx1P13297 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 Ppp1r2-ps9-202ENSMUST00000173852 882 ntBASIC12.02□□□□□ -0.49
Msx1P13297 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC12.02□□□□□ -0.49
Msx1P13297 Gm18692-201ENSMUST00000193047 511 ntBASIC12.02□□□□□ -0.49
Msx1P13297 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Gm4768-201ENSMUST00000206199 686 ntBASIC12.02□□□□□ -0.49
Msx1P13297 Olfr1315-ps1-201ENSMUST00000207542 1230 ntAPPRIS P5 TSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Gm45701-201ENSMUST00000212049 235 ntBASIC12.02□□□□□ -0.49
Msx1P13297 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Vmn1r231-201ENSMUST00000061278 936 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Msx1P13297 Ssxb3-201ENSMUST00000089374 824 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.02□□□□□ -0.49
Msx1P13297 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Msx1P13297 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.02□□□□□ -0.49
Msx1P13297 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Msx1P13297 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Gm14726-201ENSMUST00000120623 896 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 B9d1os-201ENSMUST00000137010 674 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Msx1P13297 9430092D12Rik-201ENSMUST00000194937 1274 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Gm44552-201ENSMUST00000205458 1247 ntBASIC12.01□□□□□ -0.49
Msx1P13297 AC165256.1-201ENSMUST00000216687 670 ntTSL 2 BASIC12.01□□□□□ -0.49
Msx1P13297 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.01□□□□□ -0.49
Msx1P13297 AC154838.2-201ENSMUST00000226602 747 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Olfr870-201ENSMUST00000086476 936 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Msx1P13297 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 C730045M19Rik-201ENSMUST00000201944 1315 ntBASIC12.01□□□□□ -0.49
Msx1P13297 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Cd3e-201ENSMUST00000102832 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Msx1P13297 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms