Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scn11aQ9R053 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Scn11aQ9R053 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Scn11aQ9R053 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scn11aQ9R053 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scn11aQ9R053 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Scn11aQ9R053 AC169511.2-201ENSMUST00000226674 2063 ntBASIC14.58□□□□□ -0.07
Scn11aQ9R053 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm25072-201ENSMUST00000175233 235 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm12407-201ENSMUST00000180219 324 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm37246-201ENSMUST00000192665 835 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 AC159376.1-201ENSMUST00000218504 630 ntBASIC14.58□□□□□ -0.08
Scn11aQ9R053 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scn11aQ9R053 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm2965-201ENSMUST00000198365 343 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm9463-201ENSMUST00000206707 601 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm8894-201ENSMUST00000074642 666 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm9136-201ENSMUST00000193368 454 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm3793-201ENSMUST00000204973 672 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Gm3318-201ENSMUST00000217604 1183 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 AC140375.1-201ENSMUST00000225421 694 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scn11aQ9R053 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.57□□□□□ -0.08
Scn11aQ9R053 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scn11aQ9R053 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms