Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm13492-201ENSMUST00000119772 665 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 Sval2-203ENSMUST00000120605 497 ntTSL 2 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Etfbkmt-207ENSMUST00000147934 1092 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm15809-201ENSMUST00000159361 661 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 V1rg10-201ENSMUST00000183378 937 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm28253-201ENSMUST00000186071 712 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm28835-201ENSMUST00000188415 655 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm29633-207ENSMUST00000190523 737 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm44200-201ENSMUST00000204883 662 ntTSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm34165-201ENSMUST00000222012 1174 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Ssty1-202ENSMUST00000186035 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm21454-202ENSMUST00000192204 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm20807-201ENSMUST00000194687 1336 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Gm7680-201ENSMUST00000216198 1348 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 CT030185.2-201ENSMUST00000222614 1310 ntBASIC12.5□□□□□ -0.41
Col9a1Q05722 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.5□□□□□ -0.41
Col9a1Q05722 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col9a1Q05722 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col9a1Q05722 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm37082-201ENSMUST00000192629 1927 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Olfr987-203ENSMUST00000216347 1453 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm11578-201ENSMUST00000118530 459 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm15346-201ENSMUST00000143638 475 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm22388-201ENSMUST00000158194 248 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Gm8531-201ENSMUST00000188319 893 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Col9a1Q05722 AC154527.3-201ENSMUST00000225519 989 ntBASIC12.49□□□□□ -0.41
Col9a1Q05722 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col9a1Q05722 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms