Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.25□□□□□ -0.45
Chd3B1AR17 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.25□□□□□ -0.45
Chd3B1AR17 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gzmn-202ENSMUST00000225535 989 ntBASIC12.25□□□□□ -0.45
Chd3B1AR17 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm13296-201ENSMUST00000117854 997 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm17827-201ENSMUST00000211825 742 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 AC154252.2-201ENSMUST00000223593 767 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm9996-201ENSMUST00000070359 913 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Chd3B1AR17 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.24□□□□□ -0.45
Chd3B1AR17 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chd3B1AR17 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm2606-201ENSMUST00000100754 1002 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm23949-201ENSMUST00000104027 127 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm7857-201ENSMUST00000117957 358 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm5419-201ENSMUST00000119301 527 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm9678-201ENSMUST00000198979 1149 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 82.6 ms