Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm25700-201ENSMUST00000177693 110 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm10076-201ENSMUST00000073238 384 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sf3b1Q99NB9 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm12314-201ENSMUST00000118104 538 ntBASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm24845-201ENSMUST00000158034 109 ntBASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm28882-201ENSMUST00000185504 314 ntBASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm39404-201ENSMUST00000216350 313 ntBASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sf3b1Q99NB9 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms