Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Gm8018-201ENSMUST00000173536 789 ntBASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Gm22058-201ENSMUST00000083393 310 ntBASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ddx56Q9D0R4 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ddx56Q9D0R4 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ddx56Q9D0R4 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.21□□□□□ -0.3
Ddx56Q9D0R4 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ddx56Q9D0R4 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ddx56Q9D0R4 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm27514-201ENSMUST00000183692 110 ntBASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm45930-201ENSMUST00000221330 292 ntBASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ddx56Q9D0R4 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx56Q9D0R4 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms