Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
ClpbQ60649 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
ClpbQ60649 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
ClpbQ60649 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
ClpbQ60649 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.08□□□□□ -0.48
ClpbQ60649 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.08□□□□□ -0.48
ClpbQ60649 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.07□□□□□ -0.48
ClpbQ60649 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
ClpbQ60649 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.07□□□□□ -0.48
ClpbQ60649 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC12.07□□□□□ -0.48
ClpbQ60649 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.07□□□□□ -0.48
ClpbQ60649 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.07□□□□□ -0.48
ClpbQ60649 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.07□□□□□ -0.48
ClpbQ60649 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.07□□□□□ -0.48
ClpbQ60649 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.07□□□□□ -0.48
ClpbQ60649 Pck2-205ENSMUST00000226352 2784 ntBASIC12.07□□□□□ -0.48
ClpbQ60649 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC12.07□□□□□ -0.48
ClpbQ60649 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.07□□□□□ -0.48
ClpbQ60649 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Gm8793-201ENSMUST00000183069 1303 ntBASIC12.07□□□□□ -0.48
ClpbQ60649 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
ClpbQ60649 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm6023-201ENSMUST00000118217 606 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC12.06□□□□□ -0.48
ClpbQ60649 Mir6420-201ENSMUST00000185032 102 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm18584-201ENSMUST00000203098 964 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Gm9823-201ENSMUST00000051212 327 ntBASIC12.06□□□□□ -0.48
ClpbQ60649 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
ClpbQ60649 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
ClpbQ60649 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
ClpbQ60649 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.05□□□□□ -0.48
ClpbQ60649 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
ClpbQ60649 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
ClpbQ60649 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.05□□□□□ -0.48
ClpbQ60649 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
ClpbQ60649 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
ClpbQ60649 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms