Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Limch1Q3UH68 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.8□□□□□ -0.04
Limch1Q3UH68 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm6023-201ENSMUST00000118217 606 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Gm19163-201ENSMUST00000223313 780 ntBASIC14.79□□□□□ -0.04
Limch1Q3UH68 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.79□□□□□ -0.04
Limch1Q3UH68 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm44775-201ENSMUST00000207266 1456 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm22323-201ENSMUST00000103832 109 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm15370-201ENSMUST00000117158 253 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm12363-201ENSMUST00000122250 668 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm2991-201ENSMUST00000173338 480 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm29199-201ENSMUST00000187766 775 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Gm32025-201ENSMUST00000217960 307 ntBASIC14.78□□□□□ -0.04
Limch1Q3UH68 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Limch1Q3UH68 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Limch1Q3UH68 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.77□□□□□ -0.04
Limch1Q3UH68 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms