Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Gm23363-201ENSMUST00000175024 79 ntBASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Prpf40aQ9R1C7 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Gm13813-201ENSMUST00000120998 787 ntBASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 4930412F09Rik-201ENSMUST00000139006 1017 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Prpf40aQ9R1C7 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Snord83b-201ENSMUST00000104546 94 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm13899-201ENSMUST00000121519 1255 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 AY702102-202ENSMUST00000194651 1173 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm9728-201ENSMUST00000200197 1055 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Snora73a-201ENSMUST00000082453 205 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Prpf40aQ9R1C7 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms