Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Gm10312-201ENSMUST00000078515 489 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Gm9924-202ENSMUST00000192760 2311 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Gm43289-201ENSMUST00000200537 1475 ntBASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.65□□□□□ -0.22
Trim54Q9ERP3 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.23
Trim54Q9ERP3 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm45224-201ENSMUST00000208203 414 ntBASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim54Q9ERP3 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm4909-201ENSMUST00000118749 794 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm12217-201ENSMUST00000118858 696 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 B9d1os-201ENSMUST00000137010 674 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm24845-201ENSMUST00000158034 109 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm44651-201ENSMUST00000207343 372 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gzmn-202ENSMUST00000225535 989 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms