Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm10580-201ENSMUST00000097985 396 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm10581-201ENSMUST00000097986 231 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm10582-201ENSMUST00000097987 396 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gm10583-201ENSMUST00000097988 396 ntBASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Scn4aQ9ER60 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm5267-201ENSMUST00000191574 1045 ntBASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm8234-201ENSMUST00000198523 1107 ntBASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Gm43249-201ENSMUST00000200464 458 ntBASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Scn4aQ9ER60 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
Scn4aQ9ER60 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Gm5650-201ENSMUST00000209641 598 ntBASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Gm5210-201ENSMUST00000182150 1010 ntBASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Scn4aQ9ER60 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Ssty1-202ENSMUST00000186035 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm21454-202ENSMUST00000192204 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm20807-201ENSMUST00000194687 1336 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm5638-201ENSMUST00000118618 1258 ntBASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm25554-201ENSMUST00000158075 113 ntBASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm44777-203ENSMUST00000206930 571 ntTSL 3 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms