Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Ddx56Q9D0R4 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm11425-201ENSMUST00000119608 498 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm11964-201ENSMUST00000120982 444 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm7809-201ENSMUST00000153199 742 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm25261-201ENSMUST00000157416 134 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm16379-201ENSMUST00000161469 348 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm8762-201ENSMUST00000193486 339 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm43433-201ENSMUST00000196573 481 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm9396-201ENSMUST00000076703 567 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Gm43061-201ENSMUST00000198850 2241 ntBASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ddx56Q9D0R4 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Dctn4-202ENSMUST00000223590 1530 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm24231-201ENSMUST00000104315 133 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Rmrp-201ENSMUST00000157463 271 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm3890-201ENSMUST00000182416 207 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms