Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm15920-201ENSMUST00000118998 402 ntBASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm14760-201ENSMUST00000121831 999 ntBASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm8099-201ENSMUST00000200510 742 ntBASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28aQ8CEI3 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC13.27□□□□□ -0.28
Ccdc28aQ8CEI3 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Gm12928-201ENSMUST00000117115 573 ntBASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Gm8227-201ENSMUST00000223306 571 ntBASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28aQ8CEI3 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gm2495-201ENSMUST00000191160 466 ntBASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Paupar-201ENSMUST00000194826 3482 ntBASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28aQ8CEI3 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Cog3-203ENSMUST00000227473 4197 ntBASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28aQ8CEI3 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms