Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Trem1Q9JKE2 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm6539-201ENSMUST00000119157 1064 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm1401-201ENSMUST00000122048 772 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Mir8117-201ENSMUST00000184773 107 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Ighv1-25-201ENSMUST00000195638 345 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm35960-201ENSMUST00000202712 767 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm6916-202ENSMUST00000205523 195 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm18934-201ENSMUST00000216671 1044 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm5628-201ENSMUST00000222318 1049 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trem1Q9JKE2 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Abhd4-201ENSMUST00000041197 2401 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trem1Q9JKE2 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Gm5403-201ENSMUST00000117105 2795 ntBASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Ighv1-51-201ENSMUST00000192903 354 ntBASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Gm4971-201ENSMUST00000205991 1108 ntBASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Mzt1-203ENSMUST00000227948 952 ntBASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trem1Q9JKE2 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms