Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Brf1Q8CFK2 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm6203-201ENSMUST00000209575 1342 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 AC159195.1-201ENSMUST00000225867 2086 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm11597-201ENSMUST00000121423 964 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm8018-201ENSMUST00000173536 789 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm44405-201ENSMUST00000198952 126 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gm10371-202ENSMUST00000228010 1081 ntBASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Brf1Q8CFK2 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm44758-201ENSMUST00000206096 2068 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm24231-201ENSMUST00000104315 133 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm13315-201ENSMUST00000120376 991 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Rmrp-201ENSMUST00000157463 271 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm43118-201ENSMUST00000199149 775 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 AL732506.1-201ENSMUST00000226420 281 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm10478-201ENSMUST00000084451 396 ntBASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Brf1Q8CFK2 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 AC125108.1-201ENSMUST00000218986 2330 ntBASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Brf1Q8CFK2 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Gm2420-201ENSMUST00000119864 2149 ntBASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Gm44292-201ENSMUST00000205194 2364 ntBASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Brf1Q8CFK2 Gm13736-201ENSMUST00000119272 253 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms