Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3aQ3ULJ3 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3aQ3ULJ3 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm23949-201ENSMUST00000104027 127 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm5616-201ENSMUST00000165252 384 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm8741-201ENSMUST00000174736 384 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm27627-201ENSMUST00000183644 150 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 CT009718.3-201ENSMUST00000221116 367 ntBASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3aQ3ULJ3 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm18304-201ENSMUST00000189162 546 ntBASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Upf3aQ3ULJ3 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.25□□□□□ -0.29
Upf3aQ3ULJ3 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms