Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm24891-201ENSMUST00000104391 136 ntBASIC19.1■□□□□ 0.65
Cux1P53564 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC19.1■□□□□ 0.65
Cux1P53564 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC19.1■□□□□ 0.65
Cux1P53564 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 CT485607.1-201ENSMUST00000216100 85 ntBASIC19.1■□□□□ 0.65
Cux1P53564 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Cux1P53564 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cux1P53564 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Cux1P53564 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC19.09■□□□□ 0.65
Cux1P53564 Gm43267-201ENSMUST00000199664 1796 ntBASIC19.09■□□□□ 0.65
Cux1P53564 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC19.09■□□□□ 0.65
Cux1P53564 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC19.09■□□□□ 0.65
Cux1P53564 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC19.09■□□□□ 0.65
Cux1P53564 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Cux1P53564 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 AC126262.1-201ENSMUST00000221802 1904 ntBASIC19.09■□□□□ 0.65
Cux1P53564 Gm13263-201ENSMUST00000121271 838 ntBASIC19.09■□□□□ 0.65
Cux1P53564 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Mir7076-201ENSMUST00000183519 74 ntBASIC19.09■□□□□ 0.65
Cux1P53564 Gm38210-201ENSMUST00000191944 809 ntBASIC19.09■□□□□ 0.65
Cux1P53564 Gm9132-201ENSMUST00000210182 832 ntBASIC19.09■□□□□ 0.65
Cux1P53564 Gm45575-201ENSMUST00000210283 548 ntBASIC19.09■□□□□ 0.65
Cux1P53564 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cux1P53564 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC19.08■□□□□ 0.65
Cux1P53564 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cux1P53564 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cux1P53564 AC126257.1-201ENSMUST00000213195 1536 ntBASIC19.08■□□□□ 0.65
Cux1P53564 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cux1P53564 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cux1P53564 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC19.08■□□□□ 0.64
Cux1P53564 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Cux1P53564 Gm22711-201ENSMUST00000116890 133 ntBASIC19.08■□□□□ 0.64
Cux1P53564 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC19.08■□□□□ 0.64
Cux1P53564 Gm4310-201ENSMUST00000177847 889 ntBASIC19.08■□□□□ 0.64
Cux1P53564 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC19.08■□□□□ 0.64
Cux1P53564 Gm37458-201ENSMUST00000194055 410 ntBASIC19.08■□□□□ 0.64
Cux1P53564 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.64
Cux1P53564 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cux1P53564 Gm37691-201ENSMUST00000192147 2573 ntBASIC19.08■□□□□ 0.64
Cux1P53564 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC19.08■□□□□ 0.64
Cux1P53564 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Cux1P53564 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Gm45643-201ENSMUST00000211364 1484 ntBASIC19.07■□□□□ 0.64
Cux1P53564 AC091458.1-201ENSMUST00000220902 1361 ntBASIC19.07■□□□□ 0.64
Cux1P53564 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC19.07■□□□□ 0.64
Cux1P53564 Gm44711-201ENSMUST00000205414 1264 ntBASIC19.07■□□□□ 0.64
Cux1P53564 Gm17931-201ENSMUST00000208132 634 ntBASIC19.07■□□□□ 0.64
Cux1P53564 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Cux1P53564 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
Cux1P53564 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cux1P53564 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC19.06■□□□□ 0.64
Cux1P53564 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC19.06■□□□□ 0.64
Cux1P53564 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC19.06■□□□□ 0.64
Cux1P53564 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC19.06■□□□□ 0.64
Cux1P53564 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Cux1P53564 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Cux1P53564 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC19.06■□□□□ 0.64
Cux1P53564 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cux1P53564 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms