Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
Traf1P39428 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Traf1P39428 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 AC137842.1-201ENSMUST00000227896 2064 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 Gm11930-201ENSMUST00000117788 190 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm15547-201ENSMUST00000122152 333 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Gm16296-201ENSMUST00000159905 325 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm8018-201ENSMUST00000173536 789 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm29199-201ENSMUST00000187766 775 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC14.63□□□□□ -0.07
Traf1P39428 Gm18056-201ENSMUST00000207670 568 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm18061-201ENSMUST00000208350 562 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm18063-201ENSMUST00000208529 568 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Gm18052-201ENSMUST00000208750 559 ntBASIC14.63□□□□□ -0.07
Traf1P39428 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.63□□□□□ -0.07
Traf1P39428 AC108416.1-202ENSMUST00000228927 1201 ntBASIC14.63□□□□□ -0.07
Traf1P39428 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Traf1P39428 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.63□□□□□ -0.07
Traf1P39428 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Traf1P39428 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Traf1P39428 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.62□□□□□ -0.07
Traf1P39428 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Traf1P39428 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC14.62□□□□□ -0.07
Traf1P39428 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC14.62□□□□□ -0.07
Traf1P39428 Gm37201-201ENSMUST00000191845 523 ntBASIC14.62□□□□□ -0.07
Traf1P39428 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.62□□□□□ -0.07
Traf1P39428 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.62□□□□□ -0.07
Traf1P39428 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Gm2673-201ENSMUST00000120958 1608 ntBASIC14.62□□□□□ -0.07
Traf1P39428 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Traf1P39428 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Traf1P39428 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.61□□□□□ -0.07
Traf1P39428 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Traf1P39428 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Traf1P39428 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Traf1P39428 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms